STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydCTransport ATP-binding protein CydC. (573 aa)    
Predicted Functional Partners:
cydD
Transport ATP-binding protein CydD.
 
 
0.998
cydB
Cytochrome d ubiquinol oxidase subunit II.
 
  
 0.798
appB
Putative cytochrome oxidase subunit II.
 
  
 0.776
cydA
Cytochrome d ubiquinol oxidase subunit I.
 
  
 0.715
appC_1
Cytochrome bd-II oxidase subunit I.
 
  
 0.689
aat
leucyl/phenylalanyl-tRNA-protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.
       0.665
potG
Putrescine transport ATP-binding protein PotG.
 
    
0.604
trxB
Thioredoxin reductase.
 
     0.604
SBG_0316
Putative terminal oxidase subunit II.
  
  
 0.603
appB_3
Cytochrome bd-II oxidase subunit II.
  
  
 0.603
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.