STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBG_0825Invasin/intimin. (1080 aa)    
Predicted Functional Partners:
sivH
Putative intimin.
  
  
 
0.915
SBG_1289
Intimin/invasin.
  
  
0.914
tyrP_1
Putative membrane transport protein.
  
     0.670
SBG_0266
Prophage protein.
  
     0.633
ant
Phage antirepressor protein.
  
     0.606
SBG_3317
Putative regulatory protein.
  
     0.567
ybfM
Putative outer membrane protein.
  
     0.547
ftsK
Cell division protein FtsK.
   
 
 0.498
SBG_1917
udp-N-acetylglucosamine 4-epimerase.
  
    0.485
lepB
Signal peptidase I; Belongs to the peptidase S26 family.
     
 0.472
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.