STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pflAPyruvate formate-lyase 1 activating enzyme; The differing N-termini when compared to the database hits. (255 aa)    
Predicted Functional Partners:
pflB
Formate acetyltransferase 1.
  
 0.994
tdcE
Putative formate acetyltransferase.
  
 0.904
ybiW
Putative formate acetyltransferase 3.
 
  
 0.847
porB
Putative pyruvate-flavodoxin oxidoreductase.
     
 0.829
yfiD
Conserved hypothetical protein; Acts as a radical domain for damaged PFL and possibly other radical proteins.
  
   
 0.783
adh
Alcohol dehydrogenase.
 
  
 0.733
focA
Putative formate transporter (formate channel).
     
 0.404
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.