STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBG_0937Phage-related lipoprotein; No significant database hits. (135 aa)    
Predicted Functional Partners:
gpA
Bacteriophage replication protein.
   
    0.709
gpN
Putative phage tail completion protein.
   
    0.671
SBG_2829
Putative phage protein V; Also gpV.
   
    0.671
SBG_2828
Putative major phage capside protein.
   
    0.620
gpQ
Putative capsid completion protein.
   
    0.616
gpS
Tail completion protein S.
   
    0.587
gpR
Terminase, endonuclease subunit.
   
    0.562
tum
Bacteriophage sos operon Tum protein.
   
    0.542
fII
Major tail tube protein (pseudogene).
   
    0.533
gp23
Phage tail protein; Also gpH.
   
    0.533
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.