STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpaB4-hydroxyphenylacetate 3-monooxygenase. (435 aa)    
Predicted Functional Partners:
hpaC
4-hydroxyphenylacetate 3-monooxygenase coupling protein.
 
 
 0.998
hpcB
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
 
 0.937
hpcG
2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
 
   
 0.685
hpcD
5-carboxymethyl-2-hydroxymuconate delta-isomerase.
 
  
 0.642
SBG_3753
Putative exported protein.
  
     0.587
SBG_0015
Putative regulatory protein.
  
     0.526
bcfE
Fimbrial subunit.
  
     0.523
bcfA
Type-1 fimbrial major subunit.
  
     0.468
SBG_0224
Putative secreted chitinase.
  
     0.468
chiA_2
Putative chitinase.
  
     0.461
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.