STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycdY_2Conserved hypothetical protein. (183 aa)    
Predicted Functional Partners:
ycdX_1
Conserved hypothetical protein.
  
 
 0.979
ghrA_2
Putative 2-hydroxyacid dehydrogenase in phoh-csgg intergenic region.
     
 0.914
ycdZ
Putative membrane protein.
     
 0.848
SBOV18511
Conserved hypothetical protein.
  
     0.773
SBG_2706
Conserved hypothetical protein.
  
     0.772
SBOV13191
Putative membrane protein.
  
     0.771
yceB
Conserved hypothetical protein.
  
     0.769
yfeY
Putative lipoprotein.
  
     0.767
ypfN
Putative membrane protein.
  
     0.759
matP
Conserved hypothetical protein; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain.
  
     0.756
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.