STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycdZPutative membrane protein. (176 aa)    
Predicted Functional Partners:
ycdY_2
Conserved hypothetical protein.
     
 0.848
ycdX_1
Conserved hypothetical protein.
 
   
 0.804
yqfB
Conserved hypothetical protein; Belongs to the UPF0267 family.
  
     0.747
yaeP
Conserved hypothetical protein; Belongs to the UPF0253 family.
  
     0.701
yciN
Conserved hypothetical protein.
  
     0.683
dcuC
C4-dicarboxylate anaerobic carrier.
  
     0.671
ghrA_2
Putative 2-hydroxyacid dehydrogenase in phoh-csgg intergenic region.
     
 0.667
yijD
Putative membrane protein.
  
     0.631
tyrP
Tyrosine-specific transport protein.
  
     0.626
dtpB_4
Putative PTR2 family transport protein.
      
 0.625
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.