Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mviMPutative virulence factor MviM. (307 aa)    
Predicted Functional Partners:
yceH_1
Conserved hypothetical protein; Belongs to the UPF0502 family.
  
    0.926
rimJ
Ribosomal-protein-alanine acetyltransferase.
  
    0.750
yhhX
Putative oxidoreductase.
  
     0.639
yjfP
Conserved hypothetical protein.
  
     0.583
mviN
Virulence factor MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
     
 0.564
lysS
Lysyl tRNA synthetase (LysRS); Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.540
cheA
Chemotaxis protein CheA.
 
 
    0.490
yiaH
Putative membrane protein; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
  
     0.480
STY1660_2
Putative oxidoreductase.
  
     0.478
porB
Putative pyruvate-flavodoxin oxidoreductase.
     
 0.476
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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