STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mviMPutative virulence factor MviM. (307 aa)    
Predicted Functional Partners:
yceH_1
Conserved hypothetical protein; Belongs to the UPF0502 family.
  
    0.922
rimJ
Ribosomal-protein-alanine acetyltransferase.
  
    0.703
yhhX
Putative oxidoreductase.
  
     0.639
SBG_1542
Conserved hypothetical protein.
  
  
 0.613
yjfP
Conserved hypothetical protein.
  
    0.586
lysS
Lysyl tRNA synthetase (LysRS); Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.549
mviN
Virulence factor MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
     
 0.544
arnB
Putative lipopolysaccharide biosynthesis protein.
 
  
 0.501
cheA
Chemotaxis protein CheA.
 
 
  
 0.494
rbn
Ribonuclease BN.
   
  
 0.482
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.