STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmlR_7Putative LysR-family transcriptional regulatory protein. (299 aa)    
Predicted Functional Partners:
SBG_1839
Nitrogen assimilation regulatory protein (pseudogene); This CDS appears to have been subject to a deletion event removing the 3' end.
  
     0.721
pbuE
MFS-family membrane transport protein.
 
     0.647
cmpR
Putative transcriptional regulator.
  
     0.647
gbpR
Putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.609
oxyR
Hydrogen peroxide-inducible regulon activator; Belongs to the LysR transcriptional regulatory family.
  
     0.602
catM
lysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.593
benM_2
Putative regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
     0.583
abgR
Putative LysR-family transcriptional regulatory protein; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon.
  
     0.545
gltR_2
Putative regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
   
 0.544
ydhB
Putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
   
 0.541
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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