STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpoB_1Putative lipoprotein. (209 aa)    
Predicted Functional Partners:
mrcB
Penicillin-binding protein 1b; peptidoglycan synthetase.
  
 
 
 0.963
SBG_1044
Putative lipoprotein.
 
  
 0.957
thiK
Conserved hypothetical protein.
 
  
 0.957
lpoA_3
Putative exported protein.
  
   
 0.878
ftsN
Cell division protein.
  
   
 0.790
nagZ_2
Putative glycosyl hydrolase.
  
    0.784
SBOV11261
Putative protein kinase C inhibitor.
  
  
 0.777
ydgH_2
Putative exported protein.
  
     0.758
ompC
Outer membrane protein C; Belongs to the Gram-negative porin family.
  
     0.758
yojN
Putative two-component system sensor kinase; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB.
  
     0.755
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.