STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycfPConserved hypothetical protein; Belongs to the UPF0227 family. (180 aa)    
Predicted Functional Partners:
yciN
Conserved hypothetical protein.
  
     0.768
lpoB_1
Putative lipoprotein.
 
     0.751
nagZ_2
Putative glycosyl hydrolase.
  
  
 0.741
ytfK
Conserved hypothetical protein.
  
     0.740
yieM
Conserved hypothetical protein.
  
     0.736
thiK
Conserved hypothetical protein.
     
 0.733
SBG_1044
Putative lipoprotein.
 
   
 0.730
STY1080_1
Conserved hypothetical protein.
  
     0.704
ybfA
Putative exported protein.
  
     0.692
yafA
Conserved hypothetical protein; Belongs to the UPF0255 family.
  
     0.685
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.