STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potASpermidine/putrescine transport ATP-binding protein PotA (ABC superfamily); Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (378 aa)    
Predicted Functional Partners:
potD
Spermidine/putrescine-binding periplasmic protein precursor.
 
 
 0.999
potC
Spermidine/putrescine transport system permease protein PotC.
 
 0.999
potB
Spermidine/putrescine transport system permease protein PotB.
 0.999
potI
Putrescine transport system permease protein PotI.
 
  
 0.935
potH
Putrescine transport system permease protein PotH.
 
 0.908
potF
Putrescine-binding periplasmic protein precursor.
 
  
 0.780
pepT
Aminotripeptidase; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
     
 0.479
ugpE
sn-Glycerol-3-phosphate transport system permease protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
  
 0.478
sapD
Peptide transport system ATP-binding protein SapD; Belongs to the ABC transporter superfamily.
 
   
0.470
mdlB
Putative ABC transporter ATP-binding membrane protein.
 
    
0.445
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.