STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBG_1077Putative pertussis-like toxin subunit. (135 aa)    
Predicted Functional Partners:
SBG_1078
Putative pertussis-like toxin subunit.
   
   0.976
cdtB_1
Putative toxin; Similar to many cytolethal distending toxins.
    
 
 0.972
artA
Putative pertussis toxin s1 subunit.
   
   0.918
artC
Putative bacteriophage protein (pseudogene); Signal peptide predicted for SBG0911 by SignalP 2.0 HMM (Signal peptide probabilty 1.000) with cleavage site probability 0.973 between residues 24 and 25.
     
  0.900
artC_1
Exported protein.
     
 
0.900
STY1889
Conserved hypothetical protein.
     
 0.713
ybhP
Conserved hypothetical protein.
    
 
 0.671
sufS_1
Putative amintransferase.
    
   0.513
csdA_1
Putative aminotransferase.
    
   0.513
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.