STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nikCPutative inner membrane transport protein. (270 aa)    
Predicted Functional Partners:
oxd6B
Putative inner membrane transport protein.
 
 
 0.998
appA
Putative substrate-binding transport protein.
 
 0.997
gsiA_1
Putative ABC transport ATP-binding protein.
 
 0.997
metN_1
Putative ABC transport ATP-binding subunit.
 
 
 0.997
dppD
Dipeptide transport ATP-binding protein DppD.
  
 0.910
oppD
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
  
 0.882
oppF
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
  
 0.873
yliC
Hypothetical ABC transporter permease protein.
 
  
 0.872
dppB
Dipeptide transport system permease protein DppB.
 
  
 0.865
oppB
Oligopeptide transport system permease protein OppB.
 
  
 0.863
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.