STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
metN_1Putative ABC transport ATP-binding subunit. (200 aa)    
Predicted Functional Partners:
appA
Putative substrate-binding transport protein.
 
 
 0.997
nikC
Putative inner membrane transport protein.
 
 
 0.997
oxd6B
Putative inner membrane transport protein.
 
 
 0.996
gsiA_1
Putative ABC transport ATP-binding protein.
 
 
0.994
prsD
ABC transporter, ATP-binding component.
  
     0.706
ecfA1_2
Putative ABC-transport protein, ATP-binding component.
  
     0.683
ecfA1_1
Putative ABC-transport protein, ATP-binding component.
  
    0.680
apxIB_3
Putative type-1 secretion protein.
  
     0.611
btuD
Vitamin B12 ABC transport ATP-binding protein; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system.
  
     0.525
dppD
Dipeptide transport ATP-binding protein DppD.
  
0.524
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.