STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ynaI_3Putative membrane protein. (377 aa)    
Predicted Functional Partners:
SBG_1107
Conserved hypothetical protein.
 
     0.579
SBG_2698
Putative global regulatory protein.
  
     0.525
prn
Putative autotransporter/virulence factor.
  
     0.506
SBG_2008
Putative DNA-binding protein.
  
     0.473
gcvP
Glycine dehydrogenase (decarboxylating); Belongs to the GcvP family.
   
    0.450
SBG_2304
Putative polyferredoxin.
  
     0.436
ycgE_2
Putative transcriptional regulator.
 
     0.422
SBG_1834
Putative autotransporter.
  
     0.408
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.