STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycgE_2Putative transcriptional regulator. (282 aa)    
Predicted Functional Partners:
SBG_3705
Large repetitive protein; The product of this CDS is composed of multiple degenerate repeats; note similarity to SBG3755 29.701% identity in 3313 aa overlap.
  
     0.770
bigA
Putative surface-exposed virulence protein.
  
     0.769
SBG_1358
Putative ATP/GTP-binding protein.
  
     0.766
SBG_1511
Invasin-like protein.
  
     0.766
SBG_3702
Putative integral membrane protein.
  
     0.758
sivH
Putative intimin.
  
     0.756
SBG_1098
Putative lipoprotein.
  
     0.754
SBG_3912
Conserved hypothetical protein.
  
    0.748
SBG_0032
Putative sulfatase.
  
     0.744
SBG_0038
Putative sulfatase.
  
     0.743
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.