Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
argA | aspC | SBG_2598 | SBG_0852 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | Aspartate aminotransferase. | 0.924 |
argA | gdhA | SBG_2598 | SBG_1152 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.919 |
argA | gdhA2 | SBG_2598 | SBG_1654 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.919 |
argA | glnA | SBG_2598 | SBG_3531 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | Glutamine synthetase. | 0.445 |
argA | gltB | SBG_2598 | SBG_2960 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | Glutamate synthase [NADPH] large chain precursor. | 0.923 |
argA | putA | SBG_2598 | SBG_0967 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | Proline dehydrogenase (proline oxidase); Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | 0.737 |
aspC | argA | SBG_0852 | SBG_2598 | Aspartate aminotransferase. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.924 |
aspC | gdhA | SBG_0852 | SBG_1152 | Aspartate aminotransferase. | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.929 |
aspC | gdhA2 | SBG_0852 | SBG_1654 | Aspartate aminotransferase. | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.929 |
aspC | gltB | SBG_0852 | SBG_2960 | Aspartate aminotransferase. | Glutamate synthase [NADPH] large chain precursor. | 0.918 |
aspC | gltD | SBG_0852 | SBG_2961 | Aspartate aminotransferase. | Glutamate synthase (NADPH) small chain. | 0.900 |
aspC | putA | SBG_0852 | SBG_0967 | Aspartate aminotransferase. | Proline dehydrogenase (proline oxidase); Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | 0.906 |
aspC | ramA_2 | SBG_0852 | SBG_0251 | Aspartate aminotransferase. | Putative hydrolase. | 0.900 |
gdhA | argA | SBG_1152 | SBG_2598 | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.919 |
gdhA | aspC | SBG_1152 | SBG_0852 | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Aspartate aminotransferase. | 0.929 |
gdhA | gdhA2 | SBG_1152 | SBG_1654 | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.918 |
gdhA | glnA | SBG_1152 | SBG_3531 | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamine synthetase. | 0.967 |
gdhA | gltB | SBG_1152 | SBG_2960 | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamate synthase [NADPH] large chain precursor. | 0.998 |
gdhA | gltD | SBG_1152 | SBG_2961 | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamate synthase (NADPH) small chain. | 0.942 |
gdhA | hcp_1 | SBG_1152 | SBG_0798 | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Prismane protein homolog (hybrid-cluster protein); Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O; Belongs to the HCP family. | 0.911 |
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