STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iraD_2Type VI secretion protein (gp25). (125 aa)    
Predicted Functional Partners:
SBG_1242
Type VI secretion protein (VasA).
  
  
 0.828
SBG_1238
Conserved hypothetical protein; Type VI secretion protein (VipA).
  
  
 0.823
SBG_1239
Type VI secretion protein (VipB).
  
  
 0.821
hcp1
Type VI secretion effector protein (Hcp).
  
  
 0.788
SBG_1243
Type VI secretion protein (SciN); No significant database hits.
  
  
 0.752
clpV1_3
Type VI secretion protein (ClpV); Belongs to the ClpA/ClpB family.
  
  
 0.652
SBG_1235
Type VI secretion protein (DotU).
  
  
 0.602
SBG_1233
Type VI secretion protein (ImpA).
  
  
 0.536
SBG_1236
Type VI secretion protein.
  
  
 0.525
SBG_1245
Hypothetical protein; No significant database hits.
       0.513
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.