STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clpV1_3Type VI secretion protein (ClpV); Belongs to the ClpA/ClpB family. (837 aa)    
Predicted Functional Partners:
SBG_1243
Type VI secretion protein (SciN); No significant database hits.
 
  
 0.948
SBG_1239
Type VI secretion protein (VipB).
 
 
 0.946
dnaK
DnaK protein (heat shock protein 70).
 
 
 0.938
SBG_1242
Type VI secretion protein (VasA).
 
  
 0.915
SBG_1238
Conserved hypothetical protein; Type VI secretion protein (VipA).
 
  
 0.900
hcp1
Type VI secretion effector protein (Hcp).
 
  
 0.892
SBG_3925
Conserved hypothetical protein.
 
  
 0.887
wapA_3
Rhs-family protein.
 
  
 0.883
SBG_1246
Type VI secretion protein (VgrG).
 
  
 0.859
clpP
ATP-dependent clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
 
 
 0.842
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.