STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdnIFormate dehydrogenase, nitrate-inducible,cytochrome b556. (218 aa)    
Predicted Functional Partners:
fdnH
Formate dehydrogenase, nitrate-inducible,iron-sulfur subunit.
 
 
 0.992
fdoH
Formate dehydrogenase-O beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
 
 
 0.919
fdoG
Formate dehydrogenase-O, major subunit; Carries a UGA stop codon which is readthrough as an opal codon by the selenocysteine tRNA.
 
 
 0.911
fdhE
FdhE protein; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
 
  
 0.875
selB
Selenocysteine-specific elongation factor.
 
     0.718
fdhF
Formate dehydrogenase H; This CDS contains a UGA stop codon which is readthrough as an opal codon by the selenocysteine tRNA.
  
  
 0.621
selA
L-seryl-tRNA(Ser) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis; Belongs to the SelA family.
 
    0.609
phsB
Thiosulfate reductase electron transport protein PhsB.
 
 
 0.603
dmsB
Anaerobic dimethyl sulfoxide reductase chain B.
 
 
 0.599
dmsB2
Anaerobic dimethyl sulfoxide reductase chain b.
 
 
 0.599
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.