STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBG_1394Conserved hypothetical protein. (146 aa)    
Predicted Functional Partners:
fdnG
Formate dehydrogenase, nitrate-inducible, major subunit; Signal peptide predicted for SBG1391 by SignalP 2.0 HMM (Signal peptide probabilty 0.958) with cleavage site probability 0.520 between residues 33 and 34.
      
 0.830
ompD
Outer membrane protein; Belongs to the Gram-negative porin family.
 
   
 0.675
gltB
Glutamate synthase [NADPH] large chain precursor.
     
 0.665
SBG_1182
Putative outer membrane protein.
  
     0.611
SBOV45881
Hypothetical protein.
  
     0.608
SBG_0476
Conserved hypothetical protein.
  
     0.592
SBG_3121
Putative inner membrane protein.
  
     0.571
pic_1
Haemoglobin protease.
  
     0.562
dmsC3
Putative dimethyl sulfoxide reductase subunit C.
  
     0.553
ttrS
TtrS protein.
  
     0.522
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.