STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBG_1405alpha-L-rhamnosidase. (520 aa)    
Predicted Functional Partners:
yicJ_5
Putative sugar transport protein.
 
     0.868
rhaR_1
Putative regulatory protein.
 
     0.748
scrY
Putative sugar uptake porin.
 
     0.678
rhaB
Rhamnulokinase.
  
  
 0.593
rhaA
L-rhamnose isomerase.
  
  
 0.578
rhaD
Rhamnulose-1-phosphate aldolase.
  
     0.567
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc.
   
    0.536
lacZ
Beta-galactosidase.
 
 
 0.509
yghA
Putative oxidoreductase.
  
   0.482
gatC_3
Putative phosphotransferase enzyme.
   
    0.455
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.