STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBG_1523Conserved hypothetical protein. (403 aa)    
Predicted Functional Partners:
SBG_1522
ABC transporter, substrate binding component.
 
     0.943
SBG_1520
Membrane transport protein, inner membrane component.
 
     0.864
SBG_1521
ABC transporter, membrane permease.
 
     0.835
malK_1
ABC transporter ATP-binding protein.
       0.773
rbsK_3
Sugar Kinase; Belongs to the carbohydrate kinase PfkB family.
     
 0.537
SBG_2831
Putative phage portal pbsx family protein.
    
 
 0.521
SBG_1220
Putative pathogenicity island protein.
  
     0.483
SBG_3140
Hypothetical protein.
  
     0.482
rpiR
Putative transcriptional regulator.
  
     0.430
glnK
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
    
 
 0.413
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.