Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppAPeriplasmic oligopeptide-binding protein precursor. (543 aa)    
Predicted Functional Partners:
oppB
Oligopeptide transport system permease protein OppB.
 
 0.998
oppD
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 
 0.997
oppC
Oligopeptide transport system permease protein.
 
 
 0.997
oppF
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
 0.995
mppA
Periplasmic murein peptide-binding protein MppA.
  
 
 
0.907
yliC
Hypothetical ABC transporter permease protein.
 
 
 0.781
dppB
Dipeptide transport system permease protein DppB.
 
 
 0.762
oxd6B
Putative inner membrane transport protein.
 
 
 0.718
yliD
Hypothetical ABC transporter permease protein.
 
  
 0.714
dppC
Dipeptide transport system permease protein DppC.
 
  
 0.668
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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