STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppAPeriplasmic oligopeptide-binding protein precursor. (543 aa)    
Predicted Functional Partners:
oppD
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 
 0.998
oppC
Oligopeptide transport system permease protein.
 
 0.998
oppB
Oligopeptide transport system permease protein OppB.
 
 0.998
oppF
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
 0.997
mppA
Periplasmic murein peptide-binding protein MppA.
  
  
 
0.905
yliD
Hypothetical ABC transporter permease protein.
  
 0.717
yliC
Hypothetical ABC transporter permease protein.
  
 0.715
dppB
Dipeptide transport system permease protein DppB.
  
 0.690
dppC
Dipeptide transport system permease protein DppC.
  
 0.671
dppF
Dipeptide transport ATP-binding protein DppF.
 
  
 0.636
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.