STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chaAPutative calcium/proton antiporter. (366 aa)    
Predicted Functional Partners:
yeeA_2
Putative membrane protein.
  
     0.610
ypfN
Putative membrane protein.
  
     0.602
yhfK
Conserved membrane protein.
  
     0.576
yoaE_3
Putative membrane protein.
   
  
 0.525
chaB
Cation transport regulator ChaB.
     
 0.520
cpxR
Two-component response regulatory protein.
      
 0.492
nhaK
Putative sodium/hydrogen exchanger family protein; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
    
 
 0.459
cpxP
Extracytoplasmic stress protein for protein-mediated toxicities.
   
  
 0.445
yfhB
Putative membrane protein.
  
     0.421
ampE
AmpE protein.
  
     0.414
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.