STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ldcA_3Conserved hypothetical protein. (303 aa)    
Predicted Functional Partners:
dacB
Penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase).
 
  
 0.735
mpl
Murein peptide ligase.
 
  
 0.666
SBG_1530
Conserved hypothetical protein.
    
 0.592
SBG_1660
Putative Na+/H+ exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
       0.565
dacA
D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.528
dacC
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor).
    
 0.528
amiA
Putative N-acetylmuramoyl-L-alanine amidase.
    
 0.522
mltE
Membrane-bound lytic murein transglycosylase E.
     
 0.465
rlpA
Rare lipoprotein A precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
 
 
 
 0.416
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.