Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yobDPutative membrane protein. (152 aa)    
Predicted Functional Partners:
ybaJ
Conserved hypothetical protein.
  
     0.754
ybaE
Putative solute-binding protein.
  
     0.750
iap
Alkaline phosphatase isozyme conversion protein.
  
     0.750
SBOV08931
Conserved hypothetical protein.
  
     0.749
yiaH
Putative membrane protein; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
  
     0.744
flgM
Negative regulator of flagellin synthesis (anti-sigma factor).
  
     0.743
SBG_1044
Putative lipoprotein.
  
     0.732
yfhB
Putative membrane protein.
  
     0.722
yhcO
Conserved hypothetical protein.
  
     0.715
yieE
Conserved hypothetical protein.
  
     0.715
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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