STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yebS_1Putative membrane protein. (427 aa)    
Predicted Functional Partners:
SBOV18761_3
Conserved hypothetical protein; The similarities to mce (mammalian cell entry) proteins originally described in Mycobacterium tuberculosis.
  
 0.977
pqiB
Putative exported protein.
 
  
 0.972
SBG_0867
Putative lipoprotein.
 
  
 0.948
yebU
rRNA (cytosine-C(5)-)-methyltransferase; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.
      0.835
yebR_1
Conserved hypothetical protein.
       0.589
SBOV18801
Conserved hypothetical protein.
  
  
 0.548
lipB
Lipoate-protein ligase B (lipoate biosynthesis protein B); Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
   
    0.447
yhjS
Conserved hypothetical protein.
  
     0.437
proQ
ProP effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities. May regulate ProP activity through an RNA-based, post-transcriptional mechanism. Belongs to the ProQ family.
       0.436
flgN
Flagella synthesis protein FlgN.
  
     0.425
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.