STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaKLipopolysaccharide 1,2-N-acetylglucosaminetransferase. (380 aa)    
Predicted Functional Partners:
glgA_2
Galactosyltransferase.
  
    0.622
waaI
Lipopolysaccharide 1,3-galactosyltransferase.
  
  
 0.602
wbdB
Mannosyltransferase B.
  
    0.547
waaL
O-antigen ligase.
  
  
 0.515
SBG_1910
Putative glycosyltransferase.
  
     0.508
waaB
Lipopolysaccharide 1,6-galactosyltransferase.
  
  
 0.504
SBG_3705
Large repetitive protein; The product of this CDS is composed of multiple degenerate repeats; note similarity to SBG3755 29.701% identity in 3313 aa overlap.
  
     0.501
SBG_1511
Invasin-like protein.
  
     0.499
treZ
Putative hydrolase.
   
 0.494
glgB
1,4-alpha-glucan branching enzyme.
   
 0.494
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.