STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBG_1847Hypothetical protein. (392 aa)    
Predicted Functional Partners:
wapA_3
Rhs-family protein.
 
    0.912
SBG_2717
Hypothetical protein; No significant database hits.
 
  
 0.869
SBG_2718
Hypothetical protein; No significant database hits except to the downstream CDS SBG2723 51.466% identity in 307 aa overlap.
 
    0.787
SBG_1239
Type VI secretion protein (VipB).
 
    0.780
SBG_1236
Type VI secretion protein.
 
    0.778
SBG_1238
Conserved hypothetical protein; Type VI secretion protein (VipA).
 
    0.778
rhsD
RhsD protein; This CDS appears to carry a frameshift mutation following codon 799.
 
  
 0.776
SBG_1246
Type VI secretion protein (VgrG).
 
  
 0.775
SBG_2715
Intergrase (remnant).
 
  
 0.775
SBG_1243
Type VI secretion protein (SciN); No significant database hits.
 
    0.773
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.