STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBG_1863Putative inner membrane protein. (166 aa)    
Predicted Functional Partners:
SBG_1862
Putative inner membrane protein.
 
  
 
0.982
SBG_3141
Putative membrane protein.
     
  0.900
dmlR_4
Putative LysR-family transcriptional regulatory protein.
 
     0.750
chiA_2
Putative chitinase.
  
     0.508
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
  
    0.445
yvgN
Putative aldo/keto reductase.
       0.443
pyrF
orotidine-5'-P decarboxylase.
  
    0.437
SBG_0266
Prophage protein.
  
     0.432
iolS_1
Putative aldo/keto reductase.
       0.404
STY1889
Conserved hypothetical protein.
  
     0.401
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.