Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
entB | hsdA | SBG_0505 | SBG_1876 | Isochorismatase. | Putative short-chain dehydrogenase. | 0.445 |
fabD | hsdA | SBG_1032 | SBG_1876 | Malonyl CoA-acyl carrier protein transacylase. | Putative short-chain dehydrogenase. | 0.428 |
fruK | hsdA | SBG_2018 | SBG_1876 | 1-phosphofructokinase. | Putative short-chain dehydrogenase. | 0.416 |
fruK | lacZ | SBG_2018 | SBG_0324 | 1-phosphofructokinase. | Beta-galactosidase. | 0.620 |
fruK | pfkB | SBG_2018 | SBG_1180 | 1-phosphofructokinase. | 6-phosphofructokinase isozyme; Belongs to the carbohydrate kinase PfkB family. | 0.926 |
fruK | porB | SBG_2018 | SBG_1488 | 1-phosphofructokinase. | Putative pyruvate-flavodoxin oxidoreductase. | 0.461 |
gutM | hsdA | SBG_2456 | SBG_1876 | Glucitol operon activator protein. | Putative short-chain dehydrogenase. | 0.462 |
gutM | srlA | SBG_2456 | SBG_2452 | Glucitol operon activator protein. | PTS system, glucitol/sorbitol-specific IIBC component. | 0.985 |
hsdA | entB | SBG_1876 | SBG_0505 | Putative short-chain dehydrogenase. | Isochorismatase. | 0.445 |
hsdA | fabD | SBG_1876 | SBG_1032 | Putative short-chain dehydrogenase. | Malonyl CoA-acyl carrier protein transacylase. | 0.428 |
hsdA | fruK | SBG_1876 | SBG_2018 | Putative short-chain dehydrogenase. | 1-phosphofructokinase. | 0.416 |
hsdA | gutM | SBG_1876 | SBG_2456 | Putative short-chain dehydrogenase. | Glucitol operon activator protein. | 0.462 |
hsdA | lacZ | SBG_1876 | SBG_0324 | Putative short-chain dehydrogenase. | Beta-galactosidase. | 0.403 |
hsdA | nuoC | SBG_1876 | SBG_2112 | Putative short-chain dehydrogenase. | NADH dehydrogenase I chain C; chain D; Belongs to the complex I 49 kDa subunit family. | 0.898 |
hsdA | pfkB | SBG_1876 | SBG_1180 | Putative short-chain dehydrogenase. | 6-phosphofructokinase isozyme; Belongs to the carbohydrate kinase PfkB family. | 0.416 |
hsdA | porB | SBG_1876 | SBG_1488 | Putative short-chain dehydrogenase. | Putative pyruvate-flavodoxin oxidoreductase. | 0.428 |
hsdA | srlA | SBG_1876 | SBG_2452 | Putative short-chain dehydrogenase. | PTS system, glucitol/sorbitol-specific IIBC component. | 0.458 |
hsdA | yqhD_4 | SBG_1876 | SBG_1875 | Putative short-chain dehydrogenase. | Putative alcohol dehydrogenase. | 0.577 |
lacZ | fruK | SBG_0324 | SBG_2018 | Beta-galactosidase. | 1-phosphofructokinase. | 0.620 |
lacZ | hsdA | SBG_0324 | SBG_1876 | Beta-galactosidase. | Putative short-chain dehydrogenase. | 0.403 |
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