STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
allS_4Putative transcriptional regulator. (304 aa)    
Predicted Functional Partners:
yeeZ_2
Conserved hypothetical protein.
  
    0.663
tdcA
TDC operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.659
ttdR
Putative LysR-family transcriptional regulatory protein.
  
     0.614
gbpR
Putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.551
yidZ
Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
   
 0.543
dmlR_3
Putative LysR-family transcriptional regulatory protein.
  
     0.541
SBG_1527
Putative oxidoreductase (pseudogene); The CDS carries a frameshift mutation and has undergone a deletion removing the 5' end of the gene.
  
     0.517
gltC
Putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.513
catM
lysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.488
dmlR_8
Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.488
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.