Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
arnA_1 | pmrF | SBG_2088 | SBG_2087 | Putative lipopolysaccharide modification protein. | Putative lipopolysaccharide modification protein; Catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. | 0.999 |
arnA_1 | ugd | SBG_2088 | SBG_1907 | Putative lipopolysaccharide modification protein. | UDP-glucose 6-dehydrogenase. | 0.972 |
basS | eptA_1 | SBG_3732 | SBG_3734 | Two-component sensor kinase. | Putative membrane protein. | 0.987 |
basS | pmrF | SBG_3732 | SBG_2087 | Two-component sensor kinase. | Putative lipopolysaccharide modification protein; Catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. | 0.549 |
basS | ugd | SBG_3732 | SBG_1907 | Two-component sensor kinase. | UDP-glucose 6-dehydrogenase. | 0.829 |
eptA_1 | basS | SBG_3734 | SBG_3732 | Putative membrane protein. | Two-component sensor kinase. | 0.987 |
eptA_1 | pmrF | SBG_3734 | SBG_2087 | Putative membrane protein. | Putative lipopolysaccharide modification protein; Catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. | 0.835 |
eptA_1 | ugd | SBG_3734 | SBG_1907 | Putative membrane protein. | UDP-glucose 6-dehydrogenase. | 0.832 |
galE | galE_1 | SBG_0659 | SBG_1909 | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | UDP-glucose 4-epimerase. | 0.903 |
galE | galF | SBG_0659 | SBG_1916 | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | UTP-glucose-1-phosphate uridylyltransferase. | 0.972 |
galE | galU | SBG_0659 | SBG_1614 | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | Glucose-1-phosphate uridylyltransferase. | 0.986 |
galE | ugd | SBG_0659 | SBG_1907 | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | UDP-glucose 6-dehydrogenase. | 0.919 |
galE_1 | galE | SBG_1909 | SBG_0659 | UDP-glucose 4-epimerase. | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | 0.903 |
galE_1 | galF | SBG_1909 | SBG_1916 | UDP-glucose 4-epimerase. | UTP-glucose-1-phosphate uridylyltransferase. | 0.937 |
galE_1 | galU | SBG_1909 | SBG_1614 | UDP-glucose 4-epimerase. | Glucose-1-phosphate uridylyltransferase. | 0.934 |
galE_1 | ugd | SBG_1909 | SBG_1907 | UDP-glucose 4-epimerase. | UDP-glucose 6-dehydrogenase. | 0.941 |
galF | galE | SBG_1916 | SBG_0659 | UTP-glucose-1-phosphate uridylyltransferase. | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | 0.972 |
galF | galE_1 | SBG_1916 | SBG_1909 | UTP-glucose-1-phosphate uridylyltransferase. | UDP-glucose 4-epimerase. | 0.937 |
galF | galU | SBG_1916 | SBG_1614 | UTP-glucose-1-phosphate uridylyltransferase. | Glucose-1-phosphate uridylyltransferase. | 0.903 |
galF | rffH | SBG_1916 | SBG_3466 | UTP-glucose-1-phosphate uridylyltransferase. | Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. | 0.922 |
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