STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcaBPutative acetyltransferase. (162 aa)    
Predicted Functional Partners:
wcaC
Putative glycosyltransferase.
 
  
 0.989
cysK
Cysteine synthase A.
 
 0.933
wcaD
Putative colanic acid polymerase.
  
    0.913
wcaI
Putative glycosyltransferase.
 
  
 0.911
wcaA
Putative glycosyl transferase.
 
  
 0.909
wcaE
Putative glycosyltransferase.
 
  
 0.897
cysM
Cysteine synthase B.
 
 0.897
wcaF
Putative acetyltransferase.
  
  
 0.892
wcaH
Putative O-antigen biosynthesis protein.
  
    0.888
SBG_0403
Putative lyase.
  
 0.824
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.