STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
udkUridine kinase. (213 aa)    
Predicted Functional Partners:
upp
Uracil phosphoribosyltransferase.
  
 0.973
ushA
UDP-sugar hydrolase; Belongs to the 5'-nucleotidase family.
 
 
 0.946
yfkN
Hypothetical protein.
 
 
 0.939
udp
Uridine phosphorylase.
  
 
 0.934
pyrH
Uridine 5'-monophosphate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
   
 
 0.933
cmk
Cytidylate kinase.
   
 
 0.927
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.
    
 0.927
SBG_3454
Putative uridine phosphorylase.
  
 
 0.925
yjjG
Conserved hypothetical protein.
 
 
  0.922
pyrF
orotidine-5'-P decarboxylase.
  
 0.919
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
Server load: medium (80%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.