STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yegW_1Putative gntR-family transcriptional regulator. (248 aa)    
Predicted Functional Partners:
nadR
Conserved hypothetical transcriptional regulator.
   
  
 0.790
thiD
Phosphomethylpyrimidine kinase.
  
    0.727
SBG_1960
Hydroxyethylthiazole kinase.
       0.678
hutC
Histidine utilization repressor.
  
     0.673
SBG_1957
Putative sugar kinase.
 
   
 0.539
nagE
Pts system, N-acetylglucosamine-specific IIABC component.
 
  
 0.522
draG
Putative hydrolase.
 
    0.504
uxuR
Uxu operon transcriptional regulator.
  
    0.495
nagA
N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.494
lldR
Putative L-lactate dehydrogenase operon regulator.
  
    0.493
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.