Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
stcCPutative outer membrane usher protein. (826 aa)    
Predicted Functional Partners:
stcB
Putative fimbrial chaperone protein.
 
 
 0.990
stcD
Putative exported protein.
  
 
 0.937
sbbB
Fimbrial chaperone protein.
 
 
 0.903
bcfB
Fimbrial chaperone.
 
 
 0.868
sbaC
Fimbrial chaperone protein.
 
 
 0.867
sbdB
Fimbrial chaperone protein.
 
 
 0.865
sthB
Putative fimbrial chaperone protein.
 
 
 0.865
lpfB
Fimbrial chaperone protein.
 
 
 0.860
sbfC
Fimbrial chaperone protein.
 
 
 0.859
bcfG
Fimbrial chaperone.
 
   0.854
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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