Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yehVPutative transcriptional regulator. (246 aa)    
Predicted Functional Partners:
csgD
Putative regulatory protein.
      
 0.764
gmr_4
Conserved hypothetical protein.
  
 
 
 0.759
yecE
Conserved hypothetical protein.
      
 0.739
yegE
Putative membrane protein.
 
 
 
 0.738
sbcB
Exodeoxyribonuclease I.
      
 0.681
ycdT_1
Putative membrane protein.
  
 
 
 0.658
rpoS
RNA polymerase sigma subunit RpoS (sigma-38); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.644
yhjH
Conserved hypothetical protein.
  
   
 0.634
mdoB
Putative phosphoglycerol transferase.
 
     0.587
bscA
Cellulose biosynthesis protein catalytic subunit A; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose.
      
 0.565
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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