STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBG_1990Putative gentisate 1,2-dioxygenase. (345 aa)    
Predicted Functional Partners:
SBG_1988
glutathione-S-transferase-family protein.
 
  
 0.992
mhbM_1
Putative n-hydroxybenzoate hydroxylase.
 
   
 0.947
pcaK
Putative n-hydroxybenzoate transporter.
 
     0.841
ycgM
FAA-hydrolase-family protein.
 
   
 0.838
gbpR
Putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.667
yohI
Conserved hypothetical protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.
       0.515
citB
Citrate utilization protein B.
  
     0.479
slyA2
Putative regulatory protein.
  
     0.478
SBG_2667
Hypothetical protein.
  
     0.444
hpcB
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
  
   
 0.433
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.