Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yeiOSugar efflux transporter. (393 aa)    
Predicted Functional Partners:
ydgH_2
Putative exported protein.
  
     0.625
SBG_2980
Conserved hypothetical protein.
  
     0.585
cnu
Conserved hypothetical protein.
  
     0.513
damX
DamX protein.
  
   
 0.509
lpoB_1
Putative lipoprotein.
  
     0.477
mzrA
Putative exported protein; Modulates the activity of the EnvZ/OmpR two-component regulatory system, probably by directly modulating EnvZ enzymatic activity and increasing stability of phosphorylated OmpR.
  
     0.446
ompC
Outer membrane protein C; Belongs to the Gram-negative porin family.
  
     0.440
yiiQ
Conserved hypothetical protein.
  
     0.430
yajG
Putative lipoprotein.
  
     0.422
emrA
Multidrug resistance protein A.
  
 
 0.419
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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