STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yojIPutative ABC transporter ATP-binding protein. (547 aa)    
Predicted Functional Partners:
entF
Enterobactin synthetase component F.
 
  
 0.781
fhuD
Ferrichrome-binding periplasmic protein precursor.
 
    0.660
fhuA
Ferrichrome-iron receptor.
 
  
 0.609
mdoB
Putative phosphoglycerol transferase.
  
     0.598
fhuF
Ferric iron reductase protein.
 
  
 0.573
ada
ADA regulatory protein.
       0.571
alkB
AlkB protein.
       0.567
astE
Succinylglutamate desuccinylase.
  
     0.483
ybdZ
Conserved hypothetical protein.
  
  
 0.476
smrA
Conserved hypothetical protein.
  
     0.428
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.