STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfaEPutative ferredoxin. (84 aa)    
Predicted Functional Partners:
nrdB
Ribonucleoside-diphosphate reductase 1 beta chain.
 
  
 0.996
nrdA
Ribonucleoside-diphosphate reductase 1 alpha chain.
 
  
 0.949
nuoC
NADH dehydrogenase I chain C; chain D; Belongs to the complex I 49 kDa subunit family.
  
 
 0.928
nrdF
Ribonucleoside-diphosphate reductase 2 beta chain.
  
  
 0.868
nrdI
NrdI protein.
      
 0.833
ydhL
Conserved hypothetical protein.
  
     0.707
nifU
NifU-like protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
 0.684
porB
Putative pyruvate-flavodoxin oxidoreductase.
  
 
 0.667
aegA
Putative oxidoreductase.
   
 0.653
iscS_1
Putative L-cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
  
 0.651
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.