STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfbR_1Putative oxetanocin A biosynthetic enzyme. (199 aa)    
Predicted Functional Partners:
surE
Stationary-phase survival protein.
     
 0.925
yjjG
Conserved hypothetical protein.
     
 0.912
yrfG
Putative hydrolase.
     
 0.911
ushA
UDP-sugar hydrolase; Belongs to the 5'-nucleotidase family.
     
 0.910
cmk
Cytidylate kinase.
     
 0.910
yfkN
Hypothetical protein.
     
 0.906
pup
Purine nucleoside phosphorylase.
     
 0.904
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
 
  0.903
tdk
Thymidine kinase.
    
  0.901
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase.
    
  0.901
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.