Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
ubiXPutative decarboxylase. (189 aa)    
Predicted Functional Partners:
bsdC
Conserved hypothetical protein; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives.
 
 
 0.987
yigC
Conserved hypothetical protein; Belongs to the UbiD family.
 
 
 0.987
ubiA
4-hydroxybenzoate octaprenyl transferase; Belongs to the UbiA prenyltransferase family.
 
  
 0.932
SBG_2537
Conserved hypothetical protein.
 
  
  0.916
ubiF_2
Putative monooxygenase.
     
 0.906
SBG_2905
Conserved hypothetical protein.
    
  0.905
yhbV
Conserved hypothetical protein.
    
  0.905
pad1
Putative decarboxylase.
  
  
 
0.904
yhbU_1
Putative protease.
  
 
  0.904
hpaC
4-hydroxyphenylacetate 3-monooxygenase coupling protein.
    
  0.902
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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