Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SBG_2178Bacteriophage DNA primase. (1040 aa)    
Predicted Functional Partners:
intS_2
Phage integrase; Belongs to the 'phage' integrase family.
 
   
 0.787
SBG_2175
Hypothetical phage-related protein.
       0.773
SBG_2176
Hypothetical phage-related protein.
       0.773
SBG_2177
Hypothetical phage-related protein; No significant database hits.
       0.773
intA
Putative prophage integrase; Belongs to the 'phage' integrase family.
 
  
 0.634
int-2
Bacteriophage integrase; Belongs to the 'phage' integrase family.
 
   
 0.627
SBG_2174
Hypothetical phage-related protein; No significant database hits.
       0.535
SBG_0264
Prophage DNA-binding protein.
  
  
 0.518
SBG_1853
Putative integrase.
   
  
 0.495
yejH
Putative helicase.
     
 0.407
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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