Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pinRDNA-invertase. (190 aa)    
Predicted Functional Partners:
SBG_2182
Hypothetical phage protein; No significant database hits.
       0.664
SBG_2183
Conserved hypothetical protein.
       0.608
SBG_2179
Hypothetical phage protein; Doubtful CDS with no significant database hits.
       0.446
SBG_2180
Hypothetical phage protein; Doubtful CDS with no significant database hits.
       0.446
gpA
Bacteriophage replication protein.
   
    0.421
gpN
Putative phage tail completion protein.
   
    0.413
SBG_2829
Putative phage protein V; Also gpV.
   
    0.413
SBG_2828
Putative major phage capside protein.
   
    0.410
gpQ
Putative capsid completion protein.
   
    0.409
gpS
Tail completion protein S.
   
    0.404
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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