Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sbfCFimbrial chaperone protein. (231 aa)    
Predicted Functional Partners:
sbfB
Fimbrial outer membrane usher protein.
 
 
 0.969
sbaD
Outer membrane fimbrial usher protein.
 
 
 0.870
sbbC
Outer membrane fimbrial usher protein.
 
 
 0.870
lpfC
Outer membrane fimbrial usher protein.
 
 
 0.870
sbdC
Fimbrial membrane usher protein.
 
 
 0.870
bcfC
Fimbrial usher protein.
 
 
 0.869
sthC
Outer membrane usher protein.
 
 
 0.869
stcC
Putative outer membrane usher protein.
 
 
 0.859
sbdA
Putative fimbrial subunit protein.
 
 
 0.828
sbfD
Exported protein; No significant database hits.
       0.773
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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