Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sbfBFimbrial outer membrane usher protein. (786 aa)    
Predicted Functional Partners:
sbfC
Fimbrial chaperone protein.
 
 
 0.969
sbdB
Fimbrial chaperone protein.
 
 
 0.870
sbaC
Fimbrial chaperone protein.
 
 
 0.869
sthB
Putative fimbrial chaperone protein.
 
 
 0.869
bcfB
Fimbrial chaperone.
 
 
 0.868
stcB
Putative fimbrial chaperone protein.
 
 
 0.868
sbbB
Fimbrial chaperone protein.
 
 
 0.866
lpfB
Fimbrial chaperone protein.
 
 
 0.864
bcfG
Fimbrial chaperone.
 
   0.852
sbdA
Putative fimbrial subunit protein.
 
 
 0.818
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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